Publications

General Pegasus

2013

G. B. Berriman, G. Juve, J-S. Vöckler, E. Deelman, M. Rynge, The Application of Cloud Computing to Scientific Workflows: A Study of Cost and Performance, , Proceedings of the Royal Society A, 28 vol. 371, no 1983, January 2013 (Funding Acknowledgements: NSF OCI-0910812, NSF OCI-0943725, NASA NCC5-626, and Amazon Educational Grant)

Characterizing and Profiling Scientific Workflows, Gideon Juve, Ann Chervenak, Ewa Deelman, Shishir Bharathi, Gaurang Mehta, Karan Vahi, Future Generation Computer Systems, vol. 29, no. 3, pp. 682-692, March 2013.

2012

A General Approach to Real-time Workflow Monitoring  Karan Vahi, Ian Harvey, Taghrid Samak, Dan Gunter, Kieran Evans, David Rogers, Ian Taylor, Monte Goode, Fabio Silva, Eddie Al-Shakarchi, Gaurang Mehta, Andrew Jones, Ewa Deelman The 7th Workshop on Workflows in Support of Large-Scale Science (WORKS'12), Salt Lake City, November 10-16, 2012 (Funding Acknowledgement: NSF OCI-0943705).

Integrating Policy with Scientific Workflow Management for Data-Intensive Applications, Ann L. Chervenak, David E. Smith, Weiwei Chen, Ewa Deelman, The 7th Workshop on Workflows in Support of Large-Scale Science (WORKS'12), Salt Lake City, November 10-16, 2012 (Funding Acknowledgement: NFS IIS-0905032 and FutureGrid 0910812).

Peer-to-Peer Data Sharing for Scientific Workflows on Amazon EC2, Rohit Agarwal, Gideon Juve, Ewa Deelman, 7th Workshop on Workflows in Support of Large-Scale Science (WORKS'12), 2012. (Funding Acknowledgement: NSF OCI-0943725, Viterbi-India Program)

A Tale Of 160 Scientists, Three Applications, A Workshop and A Cloud, G. Bruce Berriman, Carolyn Brinkworth, Dawn Gelino, Dennis K. Wittman, Ewa Deelman, Gideon Juve, Mats Rynge, Jamie Kinney, Astronomical Data Analysis Software and Systems XXII, 2012.

WorkflowSim: A Toolkit for Simulating Scientific Workflows in Distributed Environments, Weiwei Chen, Ewa Deelman, The 8th IEEE International Conference on eScience 2012 (eScience 2012), Chicago, Oct 8-12, 2012. (Funding Acknowledgement: NFS IIS-0905032).

Failure Analysis of Distributed Scientific Workflows Executing in the Cloud, Taghrid Samak, Dan Gunter, Monte Goode, Ewa Deelman, Gideon Juve, Fabio Silva, 8th International Conference on Network and Service Management (CNSM 2012), 2012. (Funding Acknowledgements: DOE DE-AC02-05CH11231 and NSF OCI-0943705)

Cost- and Deadline-Constrained Provisioning for Scientific Workflow Ensembles in IaaS Clouds, Maciej Malawski, Gideon Juve, Ewa Deelman, Jarek Nabrzyski, 24th IEEE/ACM International Conference on Supercomputing (SC12), 2012. (Funding Acknowledgements: NSF OCI-0943725)

An Evaluation of the Cost and Performance of Scientific Workflows on Amazon EC2, Gideon Juve, Ewa Deelman, Bruce Berriman, Benjamin P. Berman, Phil Maechling, Journal of Grid Computing, vol. 10, no. 1, pp. 5-21, 2012. (Funding Acknowledgements: NSF CCF-0725332, NSF OCI-0722019, and NASA NCC5-626)

Using Clouds for Science, Is it Just Kicking the Can Down The Road?, Ewa Deelman, Gideon Juve, G. Bruce Berriman, 2nd International Conference on Cloud Computing and Services Science (CLOSER 2012), 2012. (Funding Acknowledgements: NSF OCI-0943725)

Enabling Large-scale Scientific Workflows on Petascale Resources Using MPI Master/Worker , Mats Rynge, Gideon Juve, Karan Vahi, Scott Callaghan, Gaurang Mehta, Philip J. Maechling, Ewa Deelman, XSEDE'12, July 2012.  (Funding acknowledgements:  NSF OCI-0722019, NSF OCI-0943725, NSF EAR-0529922, USGS 07HQAG0008, NSF OCI-1053575)

Fault Tolerant Clustering in Scientific Workflows, Weiwei Chen, Ewa Deelman, IEEE 6th International Workshop on Scientific Workflows (SWF 2012) in conjunction with IEEE 8th World Congress on Services (SERVICES 2012), Honolulu, Hawaii, June 24, 2012. Funding Acknowledgement: NFS IIS-0905032

Integration of Workflow Partitioning and Resource Provisioning, Weiwei Chen, Ewa Deelman, The 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid 2012), Doctoral Symposium, Ottawa, Canada, May 14, 2012. Funding Acknowledgement: NFS IIS-0905032

2011

Experiences Using GlideinWMS and the Corral Frontend Across Cyberinfrastructures, Mats Rynge, Gideon Juve, Gaurang Mehta, Ewa Deelman, Krista Larson, Burt Holzman, Igor Sfiligoi, Frank Würthwein, G. Bruce Berriman, Scott Callaghan, Proceedings of the 7th IEEE International Conference on e-Science (e-Science 2011), December 2011. (Funding Acknowledgements: Open Science Grid, NSF OCI-0943725, and TeraGrid TG-CCR1000018)

Automating Application Deployment in Infrastructure Clouds, Gideon Juve, Ewa Deelman, 3rd IEEE International Conference on Cloud Computing Technology and Science (CloudCom 2011), 2011. (Funding Acknowlegements: DOE, NSF OCI-0943725, and NSF OCI-091812)

A Cloud‐based Dynamic Workflow for Mass Spectrometry Data Analysis,Ashish Nagavaram, Gagan Agrawal, Michael Freitas, Gaurang Mehta, Rajiv Mayani, Ewa Deelman, Proceedings of the 7th IEEE International Conference on e-Science (e-Science 2011), December 2011.

Workflow Overhead Analysis and Optimizations, Weiwei Chen, Ewa Deelman, 6th Workshop on Workflows in Support of Large-Scale Science (WORKS 11), Seattle, Washington, November 14th, 2011.

Failure Prediction and Localization in Large Scientific Workflows, Taghrid Samak, Dan Gunter, Monte Goode, Ewa Deelman, Gaurang Mehta, Fabio Silva, Karan Vahi, 6th Workshop on Workflows in Support of Large-Scale Science (WORKS 11), Seattle, Washington, November 14th, 2011.

Online Workflow Management and Performance Analysis with Stampede, Dan Gunter, Ewa Deelman, Taghrid Samak, Christopher Brooks, Monte Goode, Gideon Juve, Gaurang Mehta, Priscilla Moraes, Fabio Silva, Martin Swany, Karan Vahi, 7th International Conference on Network and Service Management (CNSM-2011), Paris, France, October 2011.

Partitioning and Scheduling Workflows across Multiple Sites with Storage Constraints, Weiwei Chen, Ewa Deelman, 9th International Conference on Parallel Processing and Applied Mathmatics, Torun, Poland, September 2011.

Online Fault and Anomaly Detection for Large-Scale Scientific Workflows, Taghrid Samak, Dan Gunter, Ewa Deelman, Gideon Juve, Gaurang Mehta, Fabio Silva, Karan Vahi, 13th IEEE International Conference on High Performance Computing and Communications (HPCC-2011), Banff, Alberta, Canada, September 2011. (Funding Acknowledgements: DOE DE-AC02-05CH11231, and NSF OCI-0943705)

Metrics for Heterogeneous Scientific Workflows: A Case Study of an Earthquake Science Application, Scott Callaghan, Philip Maechling, Patrick Small, Kevin Milner, Gideon Juve, Thomas H. Jordan, Ewa Deelman, Gaurang Mehta, Karan Vahi, Dan Gunter, Keith Beattie, International Journal of High Performance Computing Applications, 25:3, pp. 274-285, August 2011. (Funding Acknowledgements: TeraGrid TG-MCA03S012, NSF OCI-0722019, NSF OCI-0749313, NSF EAR-0106924 and USGS 02HQAG0008)

Enabling Data and Compute Intensive Workflows in Bioinformatics, Gaurang Mehta, Ewa Deelman, James A Knowles, Ting Chen, Ying Wang, Jens Vöckler, Steven Buyske, Tara Matise, 2nd International Workshop onHigh Performance Bioinformatics and Biomedicine (HiBB 2011) in conjunction with Euro-Par Conference 2011, Bordeaux France, Aug 29-30, 2011.

RseqFlow: Workflows for RNA-Seq data analysis Ying Wang, Gaurang Mehta, Rajiv Mayani, Jingxi Lu, Tade Souaiaia, Yangho Chen, Andrew Clark, Hee Jae Yoon, Lin Wan, Oleg V. Evgrafov, James A. Knowles, Ewa Deelman, and Ting Chen, Bioinformatics (2011) first published online July 27, 2011 doi:10.1093/bioinformatics/btr441

BTS: Resource capacity estimate for time-targeted science workflows, Journal of Parallel and Distributed Computing, Eun-Kyu Byun, Yang-Suk Kee, Jin-Soo Kim, Ewa Deelman, Seungryoul Maeng, Volume 71, Issue 6, Special Issue on Cloud Computing, June 2011, Pages 848-862, ISSN 0743-7315, DOI: 10.1016/j.jpdc.2011.01.008.

Ten years of software sustainability at the Infrared Processing and Analysis Center, G. Bruce Berriman, John Good, Ewa Deelman and Anastasia Alexov, Phil. Trans. R. Soc. A 2011 369, 3384-3397, doi: 10.1098/rsta.2011.0136

Wrangler: Virtual Cluster Provisioning for the Cloud, Gideon Juve and Ewa Deelman, short paper, Proceedings of the 20th International Symposium on High Performance Distributed Computing (HPDC'11), 2011. (Funding Acknowledgements: NSF OCI-0943725)

Experiences Using Cloud Computing for A Scientific Workflow Application, Jens-S. Vöckler, Gideon Juve, Ewa Deelman, Mats Rynge, G. Bruce Berriman, Proceedings of 2nd Workshop on Scientific Cloud Computing (ScienceCloud 2011), 2011. (Funding Acknowledgements: NSF OCI-0910812) 

2010

Bridging The Gap Between Business And Scientific Workflows, Mirko Sonntag Dimka Karastoyanova and Ewa Deelman, e-Science 2010, Brisbane, Australia.

The Application of Cloud Computing to Astronomy: A Study of Cost and Performance, G. Bruce Berriman, Gideon Juve, Ewa Deelman, Moira Regelson, Peter Plavchan, in Workshop on e-Science challenges in Astronomy and Astrophysics in conjunction with the 6th IEEE International Conference on e-Science (e-Science 2010), December 2010. (Funding Acknowledgements: NSF OCI-0438712, and NSF CCF-0725332)

Mapping Workflows on Grid Resources: Experiments with the Montage Workflow. Rizos Sakellariou, Henan Zhao, Ewa Deelman, In Grids, P2P and Services Computing, Springer, 2010, pp. 119-132.

BPEL4Pegasus: Combining Business and Scientific Workflows, Mirko Sonntag, Dimka Karastoyanova and Ewa Deelman, International Conference on Service-Oriented Computing (ICSOC), San Francisco, California, December 2010.

Exploiting the Cloud of Computing Environments: An Application¹s perspective, Raphael Bolze and Ewa Deelman, Cloud Computing and Software Services: Theory and Techniques, Editors Syed A. Ahson and Mohammad Ilyas, CRC Press, July 2010.

CyberShake: A Physics-Based Seismic Hazard Model for Southern California, Robert Graves, Thomas Jordan, Scott Callaghan, Ewa Deelman, Edward Field, Gideon Juve, Carl Kesselman, Philip Maechling, Gaurang Mehta, Kevin Milner, David Okaya, Patrick Small, Karan Vahi, Pure and Applied Geophysics, May 2010. (Funding Acknowledgements: NSF OCI-0438712, NSF CCF-0725332)

Experiences with Resource Provisioning for Scientific Workflows Using Corral, Gideon Juve, Ewa Deelman, Karan Vahi, Gaurang Mehta, Scientific Programming, 18:2, pp. 77-92, April 2010. (Funding Acknowledgements: NSF OCI-0943725 and NSF OCI-0749313) 

The Application of Cloud Computing to the Creation of Image Mosaics and Management of Their Provenance, G. Bruce Berriman, Ewa Deelman, Paul Groth, and Gideon Juve, SPIE Conference 7740: Software and Cyberinfrastructure for Astronomy, 2010.

Data Sharing Options for Scientific Workflows on Amazon EC2, Gideon Juve, Ewa Deelman, Karan Vahi, Gaurang Mehta, Bruce Berriman, Benjamin P. Berman, Phil Maechling, 22nd IEEE/ACM Conference on Supercomputing (SC10), New Orleans, Louisiana, November 2010. (Funding Acknowledgments: NSF CCF-0725332, NSF OCI-0722019, and NASA NCC5-626)

Scaling up Workflow-based Applications, Scott Callaghan, Ewa Deelman, Dan Gunter, Gideon Juve, Philip Maechling, Christopher Brooks, Karan Vahi, Kevin Milner, Robert Graves, Edward Field, David Okaya, Thomas Jordan, Journal of Computer and System Sciences, 76:6, pp. 428-446,September 2010. (Funding Acknowledgements: TeraGrid TG-MCA03S012, NSF OCI-0722019, and NSF OCI-0749313)

Parameterized specification, configuration and execution of data-intensive scientific workflows, Vijay S. Kumar, Tahsin Kurc, Varun Ratnakar, Jihie Kim, Gaurang Mehta, Karan Vahi, Yoonju Lee Nelson, P. Sadayappan, Ewa Deelman, Yolanda Gil, Mary Hall and Joel Saltz - 2010. Cluster Computing Journal, 13(3):315-333.

Scientific Workflows and Clouds, Gideon Juve, Ewa Deelman, ACM Crossroads, 16:3, pp. 14-18, Spring 2010.

2009

Adaptive Workflow Processing and Execution in Pegasus. In Concurrency and Computation: Practice and Experience, Kevin Lee, Norman W. Paton, Rizos Sakellariou, Ewa Deelman, Alvaro A. A. Fernandes, Gaurang Mehta. Volume 21, issue 16, 2009, pages 1965-1981.

Grids and Clouds: Making Workflow Applications Work in Heterogeneous Distributed Environments, Ewa Deelman. International Journal of High Performance Computing Applications. 2009.

Scientific Workflow Applications on Amazon EC2., Gideon Juve, Ewa Deelman, Karan Vahi, Gaurang Mehta, Bruce Berriman, Benjamin P. Berman and Phil Maechling. Workshop on Cloud-based Services and Applications in conjunction with 5th IEEE International Conference on e-Science (e-Science 2009), Oxford UK, December 9-11, 2009.

Pipeline-Centric Provenance Model., Paul Groth, Ewa Deelman, Gideon Juve, Gaurang Mehta, Bruce Berriman. 4th Workshop on Workflows in Support of Large-Scale Science (WORKS 09) in conjunction with 21st IEEE/ACM conference on Supercomputing (SC 09), November 2009.

An integrated framework for performance-based optimization of scientific workflows, Vijay S. Kumar, P. Sadayappan, Gaurang Mehta, Karan Vahi, Ewa Deelman, Varun Ratnakar, Jihie Kim, Yolanda Gil, Mary W. Hall, Tahsin M. Kurç, Joel H. Saltz - HPDC 2009: 177-186.

Mapping Workflows on Grid Resources: Experiments with the Montage Workflow, Rizos Sakellariou and Henan Zhao and Ewa Deelman, CoreGrid 2009.

2008

Resource Provisioning Options for Large-Scale Scientific Workflows, Gideon Juve, Ewa Deelman, Third International Workshop on Scientific Workflows and Business Workflow Standards in e-Science (SWBES) in conjunction with Fourth IEEE International Conference on e-Science (e-Science 2008), 10 December 2008 in Indianapolis, Indiana, USA.

Reducing Time-to-Solution Using Distributed High-Throughput Mega-Workflows - Experiences from SCEC CyberShake, Scott Callaghan, Philip Maechling, Ewa Deelman, Karan Vahi, Gaurang Mehta, Gideon Juve, Kevin Milner, Robert Graves, Edward Field, David Okaya, Dan Gunter, Keith Beattie, Thomas Jordan, Fourth IEEE International Conference on e-Science (e-Science 2008), 10-12 December 2008 in Indianapolis, Indiana, USA.

On the Use of Cloud Computing for Scientific Workflows, Christina Hoffa, Gaurang Mehta, Timothy Freeman, Ewa Deelman, Kate Keahey, Bruce Berriman, John Good, 3rd International Workshop on Scientific Workflows and Business Workflow Standards in e-Science (SWBES) in conjunction with Fourth IEEE International Conference on e-Science (e-Science 2008), 10 December 2008 in Indianapolis, Indiana, USA.

Characterization of Scientific Workflows, Shishir Bharathi, Ann Chervenak, Ewa Deelman, Gaurang Mehta, Mei-Hui Su, Karan Vahi, 3rd Workshop on Workflows in Support of Large-Scale Science (WORKS08), Austin, TX, November 2008.

Workflows and e-Science: An overview of workflow system features and capabilities, Ewa Deelman, Dennis Gannon, Matthew Shields, Ian Taylor, Future Generation Computer Systems, July 10th 2008.

Data Management Challenges of Data-Intensive Scientific Workflows, Ewa Deelman, Ann Chervenak, 3rd International Workshop on Workflow Systems in e-Science (WSES 08), in conjunction with CCGrid 2008 Conference, Lyon, France, May 20, 2008.

The Cost of Doing Science on the Cloud: The Montage Example, Ewa Deelman, Gurmeet Singh, Miron Livny, Bruce Berriman, John Good. Proceeding of Super Computing 2008, Austin, Texas.

Adaptive Workflow Processing and Execution in Pegasus, K.Lee, N. W. Paton, R. Sakellariou, E. Deelman, A. A. A. Fernandes, G. Mehta, 3rd International Workshop on Workflow Management and Applications in Grid Environments (WaGe08), in Proceedings of the Third International Conference on Grid and Pervasive Computing Symposia/Workshops, Pages 99-106, ISBN 978-0-7695-3177-9, May 25-28 2008, Kunming, China.

Provenance: The Bridge Between Experiments and Data, Miles, S.; Groth, P.; Deelman, E.; Vahi, K.; Mehta, G.; Moreau, L.Computing in Science & Engineering Volume:10 Issue:3 May-June 2008 Page(s):38-46.

Workflow Task Clustering for Best Effort Systems with Pegasus, Gurmeet Singh, Mei-Hui Su, Karan Vahi, Ewa Deelman, Bruce Berriman, John Good, Daniel S. Katz, and Gaurang Mehta. Mardi Gras Conference, Baton Rouge, LA, January 2008.

2007

Examining the Challenges of Scientific Workflows, Gil, Y.; Deelman, E.; Ellisman, M.; Fahringer, T.; Fox, G.; Gannon, D.; Goble, C.; Livny, M.; Moreau, L.; Myers, J. - Computer , Vol.40, no.12, pp.24-32, Dec. 2007.

Connecting Scientific Data to Scientific Experiments with Provenance, Simon Miles, Ewa Deelman, Paul Groth, Karan Vahi, Gaurang Mehta, Luc Moreau. Third IEEE International Conference on e-Science and Grid Computing (e-Science 2007) 10-13 December 2007 in Bangalore, India.

Provenance Trails in the Wings/Pegasus Workflow System, Jihie Kim, Ewa Deelman, Yolanda Gil, Gaurang Mehta, Varun Ratnakar. Concurrency and Computation: Practice and Experience, Special Issue on the First Provenance Challenge, 2007.

Data Placement for Scientific Applications in Distributed Environments, Ann Chervenak, Ewa Deelman, Miron Livny, Mei-Hui Su, Rob Schuler, Shishir Bharathi, Gaurang Mehta, Karan Vahi, Proceedings of Grid Conference 2007, Austin, Texas, September 2007.

Optimizing Workflow Data Footprint, Gurmeet Singh, Karan Vahi, Arun Ramakrishnan, Gaurang Mehta, Ewa Deelman, Henan Zhao, Rizos Sakellariou,Kent Blackburn, Duncan Brown, Stephen Fairhurst, David Meyers, G. Bruce Berriman. Special issue of the Scientific Programming Journal dedicated to Dynamic Computational Workflows: Discovery, Optimisation and Scheduling, 2007.

Wings for Pegasus: Creating Large-Scale Scientific Applications Using Semantic Representations of Computational Workflows, Yolanda Gil, Varun Ratnakar, Ewa Deelman, Gaurang Mehta, and Jihie Kim. Proceedings of the 19th Annual Conference on Innovative Applications of Artificial Intelligence (IAAI), Vancouver, British Columbia, Canada, July 22-26, 2007.

Integrating Existing Scientific Workflow Systems: The Kepler/Pegasus Example, Nandita Mandal, Ewa Deelman, Gaurang Mehta, Mei-Hui Su, and Karan Vahi, Proceedings of the Second Workshop on Workflows in Support of Large-Scale Science (WORKS'07), in conjunction with the IEEE International Symposium on High Performance Distributed Computing Monterrey, CA, June 2007.

Scheduling Data-Intensive Workflows onto Storage-Constrained Distributed Resources, Arun Ramakrishnan, Gurmeet Singh, Henan Zhao, Ewa Deelman, Rizos Sakellariou, Karan Vahi, Kent Blackburn , David Meyers and Michael Samidi. Seventh IEEE International Symposium on Cluster Computing and the Grid - CCGrid 2007

2006

Kickstarting Remote Applications, Jens Voeckler, Gaurang Mehta, Yong Zhao, Ewa Deelman, Mike Wilde. Presented at GCE06 Second International Workshop on Grid Computing Environments Tampa Florida.

Managing Large-Scale Scientific Workflows in Distributed Environments: Experiences and Challenges, Ewa Deelman, Yolanda Gil. Workflows in e-Science, e-Science 2006, Amsterdam, December 4-6, 2006.

Application-level Resource Provisioning on the Grid, Gurmeet Singh, Carl Kesselman, Ewa Deelman. e-Science 2006, Amsterdam, December 4-6, 2006.

Enabling Parallel Scientific Applications with Workflow Tools, A. Lathers, M.-H. Su, A. Kulungowski, A. W. Lin, G. Mehta, S. T. Peltier, Ewa Deelman, and M. H. Ellisman, Proceedings of Challenges of Large Applications in Distributed Environments (CLADE), Paris, 2006.

2005

Pegasus: a Framework for Mapping Complex Scientific Workflows onto Distributed Systems, Ewa Deelman, Gurmeet Singh, Mei-Hui Su, James Blythe, Yolanda Gil, Carl Kesselman, Gaurang Mehta, Karan Vahi, G. Bruce Berriman, John Good, Anastasia Laity, Joseph C. Jacob, Daniel S. Katz. Scientific Programming Journal, Vol 13(3), 2005, Pages 219-237.

Simplifying construction of complex workflows for non-expert users of the Southern California Earthquake Center Community Modeling Environment, Philip Maechling, Hans Chalupsky, Maureen Dougherty, Ewa Deelman, Yolanda Gil, Sridhar Gullapalli, Vipin Gupta, Carl Kesselman, Jihie Kim, Gaurang Mehta, Brian Mendenhall, Thomas A. Russ, Gurmeet Singh, Marc Spraragen, Garrick Staples, Karan Vahi. SIGMOD Record 34(3): 24-30 (2005).

Task Scheduling Strategies for Workflow-based Applications in Grids, J Blythe, S Jain, E Deelman, Y Gil, K Vahi, A Mandal,K Kennedy, CCGrid 2005, Cardiff, UK.

Optimizing Grid-Based Workflow Execution, Gurmeet Singh,Carl Kesselman, Ewa Deelman, Journal of Grid Computing, Volume 3(3-4), December 2005, Pages 201-219.

The Pegasus Portal: Web Based Grid Computing, G Singh, E Deelman, G Mehta, K Vahi, Mei Su, B. Berriman, J Good, J Jacob, D Katz, A Lazzarini, K Blackburn, S Koranda, The 20th Annual ACM Symposium on Applied Computing, Santa Fe, New Mexico, March 13 -17, 2005.

2004

Pegasus : Mapping Scientific Workflows onto the Grid, Ewa Deelman, James Blythe, Yolanda Gil, Carl Kesselman, Gaurang Mehta, Sonal Patil, Mei-Hui Su, Karan Vahi, Miron Livny, Across Grids Conference 2004, Nicosia, Cyprus.

2003

Pegasus and the Pulsar Search: From Metadata to Execution on the Grid, Ewa Deelman, James Blythe, Yolanda Gil, Carl Kesselman, Scott Koranda, Albert Lazzarini, Gaurang Mehta, Maria Alessandra Papa, Karan Vahi, Applications Grid Workshop, PPAM 2003, Czestochowa, Poland 2003.

Workflow Management in GriPhyN, Ewa Deelman, James Blythe, Yolanda Gil, and Carl Kesselman, in Grid Resource Management, J. Nabrzyski, J. Schopf, and J. Weglarz editors, Kluwer 2003.

Mapping Abstract Complex Workflows onto Grid Environments, Ewa Deelman, James Blythe, Yolanda Gil, Carl Kesselman, Gaurang Mehta, Karan Vahi, Kent Blackburn, Albert Lazzarini, Adam Arbree, Richard Cavanaugh, and Scott Koranda, Journal of Grid Computing, Vol.1, no. 1, 2003, pp. 25-39.

Using AI Techniques for Workflow Mapping

Wings: Intelligent Workflow-Based Design of Computational Experiments, Yolanda Gil, Varun Ratnakar, Ewa Deelman et al. Intelligent Systems, IEEE. January 2010.

Artificial Intelligence and Grids: Workflow Planning and Beyond, Yolanda Gil, Ewa Deelman, Jim Blythe, Carl Kesselman, and Hongsuda Tangmurarunkit. IEEE Intelligent Systems, January 2004.

Transparent Grid Computing: a Knowledge-Based Approach, Jim Blythe, Ewa Deelman, Yolanda Gil, Carl Kesselman, IAAI 2003.

The Role of Planning in Grid Computing, Jim Blythe, Ewa Deelman, Yolanda Gil, Carl Kesselman, Amit Agarwal, Gaurang Mehta, Karan Vahi, ICAPS 2003.

Planning for workflow construction and maintenance on the Grid, Jim Blythe, Ewa Deelman, Yolanda Gil, ICAPS 2003 Workshop on Planning for Web Services.

Pegasus: Planning for Execution in Grids, Ewa Deelman, James Blythe, Yolanda Gil, Carl Kesselman, GriPhyN technical report 2002-20.

From Metadata to Execution on the Grid Pegasus and the Pulsar Search, Ewa Deelman James Blythe Yolanda Gil Carl Kesselman Gaurang Mehta Karan Vahi, Scott Koranda, Albert Lazzarini, Maria Alessandra Papa, GriPhyN technical report 2003-15.

Papers on Applications Using Pegasus

Managing Large-Scale Workflow Execution from Resource Provisioning to Provenance tracking: The CyberShake Example, Ewa Deelman, Scott Callaghan, Edward Field, Hunter Francoeur, Robert Graves, Nitin Gupta, Vipin Gupta, Thomas H. Jordan, Carl Kesselman, Philip Maechling, John Mehringer, Gaurang Mehta, David Okaya, Karan Vahi, Li Zhao. e-Science 2006, Amsterdam, December 4-6, 2006. BEST PAPER AWARD

Automating Climate Science: Large Ensemble Simulations on the TeraGrid with the GriPhyN Virtual Data System, Veronika Nefedova, Robert Jacob, Ian Foster, Zhengyu Liu, Yun Liu, Ewa Deelman, Gaurang Mehta, Mei-Hui Su, Karan Vahi. e-Science 2006, Amsterdam, December 4-6, 2006.

Comparison of Two Methods for Building Astronomical Image Mosaics on a Grid, Daniel S. Katz, Joseph C. Jacob, G. Bruce Berriman, John Good, Anastasia C. Laity, Ewa Deelman, Carl Kesselman, Gurmeet Singh, Mei-Hui Su, Thomas A. Prince. Parallel Processing, 2005. ICPP 2005 Workshops. International Conference Workshops on , pp. 85- 94, 14-17 June 2005 Paper on Applications using Pegasus.

Grid-Based Galaxy Morphology Analysis for the National Virtual Observatory, Ewa Deelman, Raymond Plante, Carl Kesselman, Gurmeet Singh, Mei-Hui Su, Gretchen Greene, Robert Hanisch, Niall Gaffney, Antonio Volpicelli, James Annis, Vijay Sekhri, Tamas Budavari, Maria Nieto-Santisteban, William O’Mullane, David Bohlender, Tom McGlynn, Arnold Rots, Olga Pevunova, Proceedings of SC 2003.

Montage A Grid Enabled Image Mosaic Service for the National Virtual Observatory, G. B. Berriman , J. C. Good, A. C. Laity, A. Bergou, J. Jacob, D. S. Katz, E. Deelman, C. Kesselman, G. Singh, M.-H. Su, R. Williams, ADASS XIII, ASP Conference Series Vol XXX, F Ochsenbein M Allen and D Egret eds, 2003.

Montage on the Grid, Gurmeet Singh, Ewa Deelman, NVO Technical Report, April 3, 2003.
for more information on Montage, please visit http://montage.ipac.caltech.edu/

Multi-Wavelength Image Space: Another Grid-Enabled Science, R. Williams, B. Berriman, E. Deelman, J. Good, J. Jacob, C. Kesselman, C. Lonsdale, S. Oliver, T. Prince. Journal of Concurrency and Computation: Practice and Experience, Wiley, March 2003.

GriPhyN and LIGO, building a virtual data grid for gravitational wave scientists, E. Deelman, C. Kesselman, G. Mehta, L. Meshkat, L. Pearlman, K. Blackburn, P. Ehrens, A. Lazzarini, R. Williams, S. Koranda. High Performance Distributed Computing, 2002. HPDC-11 2002. Page(s): 225-234.

Book Chapters discussing Pegasus.

Scientific Workflows in the Cloud, Gideon Juve and Ewa Deelman, in Grids, Clouds and Virtualization, M. Cafaro and G. Aloisio, Eds. Springer, pp. 71-91, 2010.

Pegasus: Mapping Large-Scale Workflows to Distributed Resources, Ewa Deelman, Gaurang Mehta, Gurmeet Singh, Mei-Hui Su, and Karan Vahi, in Workflows for e-Science, 2007.

Generating Complex Astronomy Workflows, G. Bruce Berriman, Ewa Deelman, John Good, Joseph C. Jacob, Daniel S. Katz, Anastasia C. Laity, Thomas A. Prince, Gurmeet Singh, and Mei-Hui Su, in Workflows for e-Science, 2007

SCEC CyberShake Workflows - Automating Probabilistic Seismic Hazard Analysis Calculations, Philip Maechling, Ewa Deelman, Li Zhao, Robert Graves, Gaurang Mehta, Nitin Gupta, John Mehringer, Carl Kesselman, Scott Callaghan, David Okaya, Hunter Francoeur, Vipin Gupta, Yifeng Cui, Karan Vahi, Thomas Jordan, and Edward Field, in Workflows for e-Science, 2007

Some Ideas about General Workflow Management Architectures

Overall architecture and control flow, Ewa Deelman, Ian Foster, Carl Kesselman, Reagan Moore, Sanjay Ranka GriPhyN technical report 2004-24, December 2003.

This technical report gives an overview of a new architecture being discussed within GriPhyN. This architecture formalizes the workflow generation, refinement and execution processes as graph manipulation (editing) processes.

Types of Editors and Specifications, James Blythe, Richard Cavanaugh, Ewa Deelman, Ian Foster, Seung-Hye Jang, Carl Kesselman, Keith Marzullo, Reagan Moore, Valerie Taylor, Xianan Zhang GriPhyN technical report 2004-23, December 2003.

This report describes the editors that can modify the scientific workflows developed within GriPhyN.

Books on Workflow Technologies

Workflows for e-Science, Ian Taylor, Ewa Deelman, Dennis Gannon, and Matthew Shield (Eds.), Springer 2006.