Uses of Class
edu.isi.pegasus.planner.dax.File

Packages that use File

Package	Description
edu.isi.pegasus.planner.dax

Uses of File in edu.isi.pegasus.planner.dax

Fields in edu.isi.pegasus.planner.dax declared as File

Modifier and Type	Field	Description
protected File	AbstractJob.mStderr
protected File	AbstractJob.mStdin
protected File	AbstractJob.mStdout

Fields in edu.isi.pegasus.planner.dax with type parameters of type File

Modifier and Type	Field	Description
private List<File>	ADAG.mFiles	The list of edu.isi.pegasus.planner.dax.File objects
protected Set<File>	AbstractJob.mUses

Methods in edu.isi.pegasus.planner.dax that return File

Modifier and Type	Method	Description
File	File.clone()	Return a clone of this File
File	AbstractJob.getStderr()
File	AbstractJob.getStdin()	Get the STDIN file object
File	AbstractJob.getStdout()
File	File.setExecutable()	Mark the file as executable.
File	File.setExecutable(boolean executable)	Mark the file as executable.
File	File.setLink(File.LINK link)	Set the file linkage
File	File.setOptional(boolean optionalflag)	Set the optional flag on the file.
File	File.setRegister(boolean registerflag)	Set the register flag of the file.
File	File.setSize(String size)	Set the size of the file.
File	File.setTransfer(File.TRANSFER transferflag)	Set the transfer type of the file
File	File.setUseForPlanning()	Mark the file to be used for planner.
File	File.setUseForPlanning(boolean value)	Mark the file to be used for planner.

Methods in edu.isi.pegasus.planner.dax that return types with arguments of type File

Modifier and Type	Method	Description
List<File>	ADAG.getFiles()	Returns a list of File objects defined as the inDax Replica Catalog
Set<File>	AbstractJob.getUses()

Methods in edu.isi.pegasus.planner.dax with parameters of type File

Modifier and Type	Method	Description
AbstractJob	AbstractJob.addArgument(File file)	Add a file object to the argument List.
AbstractJob	AbstractJob.addArgument(File[] files)	Add a Array of File objects to the argument list.
AbstractJob	AbstractJob.addArgument(File[] files, String filedelimiter)	Deprecated. As of 5.0.2 release this function will not work consistently as ARG_LIMITER is always added between args
AbstractJob	AbstractJob.addArgument(String argkey, File argvalue)	Add a argument key and File value to the argument List. The argkey and argvalue are seperated by space. Example addArgument("-i",new File("f.a")) will result in the argument being added as -i <file name="f.a"> Multiple calls to addArgument results in the arguments being separated by space.
AbstractJob	AbstractJob.addArgument(String argkey, File[] argvalue)	Add a argument key and an array of Files to the argument List. The argkey and argvalue are separated space. The files are separated by a space Example: File[] files = {new File("f.a1"), new File("f.a2")}; job.addArgument("-i",files) will result in the argument being added as -i <file name="f.a1"> <file name="f.a2"> Multiple calls to addArgument results in the arguments being separated by space.
AbstractJob	AbstractJob.addArgument(String argkey, File[] argvalue, String argdelimiter, String filedelimiter)	Add a argument key and an array of Files to the argument List. The argkey and argvalue are separated by the argdelimiter. The files are separated by a filedelimiter Example: File[] files = {new File("f.a1"), new File("f.a2")}; job.addArgument("-i",files,"=",",") will result in the argument being added as -i=<file name="f.a1">,<file name="f.a2"> Multiple calls to addArgument results in the arguments being separated by space.
AbstractJob	AbstractJob.addArgument(String argkey, File argvalue, String argdelimiter)	Add a argument key and File value to the argument List. The argkey and argvalue are separated by the argdelimiter. Example addArgument("-i",new File("f.a"),"=") will result in the argument being added as -i=<file name="f.a"> Multiple calls to addArgument results in the arguments being separated by space.
ADAG	ADAG.addFile(File file)	Add a RC File object to the top of the DAX.
void	File.JsonSerializer.serialize(File f, com.fasterxml.jackson.core.JsonGenerator gen, com.fasterxml.jackson.databind.SerializerProvider sp)	Serialize a File into YAML representation
AbstractJob	AbstractJob.setStderr(File stderr)
AbstractJob	AbstractJob.setStderr(File stderr, boolean register)
AbstractJob	AbstractJob.setStderr(File stderr, File.TRANSFER transfer)
AbstractJob	AbstractJob.setStderr(File stderr, File.TRANSFER transfer, boolean register)
AbstractJob	AbstractJob.setStderr(File stderr, File.TRANSFER transfer, boolean register, boolean optional)
AbstractJob	AbstractJob.setStdin(File stdin)
AbstractJob	AbstractJob.setStdin(File stdin, boolean register)
AbstractJob	AbstractJob.setStdin(File stdin, File.TRANSFER transfer)
AbstractJob	AbstractJob.setStdin(File stdin, File.TRANSFER transfer, boolean register)
AbstractJob	AbstractJob.setStdin(File stdin, File.TRANSFER transfer, boolean register, boolean optional)
AbstractJob	AbstractJob.setStdout(File stdout)
AbstractJob	AbstractJob.setStdout(File stdout, boolean register)
AbstractJob	AbstractJob.setStdout(File stdout, File.TRANSFER transfer)
AbstractJob	AbstractJob.setStdout(File stdout, File.TRANSFER transfer, boolean register)
AbstractJob	AbstractJob.setStdout(File stdout, File.TRANSFER transfer, boolean register, boolean optional)
AbstractJob	AbstractJob.uses(File file, File.LINK link)
AbstractJob	AbstractJob.uses(File file, File.LINK link, boolean register)
AbstractJob	AbstractJob.uses(File file, File.LINK link, boolean register, String size)
AbstractJob	AbstractJob.uses(File file, File.LINK link, File.TRANSFER transfer)
AbstractJob	AbstractJob.uses(File file, File.LINK link, File.TRANSFER transfer, boolean register)
AbstractJob	AbstractJob.uses(File file, File.LINK link, File.TRANSFER transfer, boolean register, boolean forPlanning)
AbstractJob	AbstractJob.uses(File file, File.LINK link, File.TRANSFER transfer, boolean register, boolean optional, boolean executable)
AbstractJob	AbstractJob.uses(File file, File.LINK link, File.TRANSFER transfer, boolean register, boolean optional, boolean executable, String size)
AbstractJob	AbstractJob.uses(File file, File.LINK link, File.TRANSFER transfer, boolean register, String size)
AbstractJob	AbstractJob.uses(File file, File.LINK link, File.TRANSFER transfer, String size)
AbstractJob	AbstractJob.uses(File file, File.LINK link, String size)

Method parameters in edu.isi.pegasus.planner.dax with type arguments of type File

Modifier and Type	Method	Description
AbstractJob	AbstractJob.addArgument(String argkey, List<File> argvalue)	Add a argument key and a List of Files to the argument List. The argkey and argvalue are separated space. The files are separated by a space Example:
AbstractJob	AbstractJob.addArgument(String argkey, List<File> argvalue, String argdelimiter, String filedelimiter)	Add a argument key and a List of Files to the argument List. The argkey and argvalue are separated by the argdelimiter. The files are separated by a filedelimter Example: List<File> files = new LinkedList<File>(); files.add(new File("f.a1")); files.add(new File("f.a2")); job.addArgument("-i",files,"=",",") will result in the argument being added as -i=<file name="f.a1">,<file name="f.a2"> Multiple calls to addArgument results in the arguments being separated by space.
AbstractJob	AbstractJob.addArgument(List<File> files)	Add a List of File objects to the argument list.
AbstractJob	AbstractJob.addArgument(List<File> files, String filedelimiter)	Deprecated. As of 5.0.2 release this function will not work consistently as ARG_LIMITER is always added between args
ADAG	ADAG.addFiles(List<File> files)	Add Files to the RC Section on top of the DAX
AbstractJob	AbstractJob.uses(List<File> files, File.LINK link)

Constructors in edu.isi.pegasus.planner.dax with parameters of type File

Modifier	Constructor	Description
	File(File f)	Copy constructor
	File(File f, File.LINK link)	Copy constructor, but change the linkage of the file.