Pegasus WMS
User Guide
1. Introduction
2. Deployment Scenarios
3. Installation
4. Tutorial
5. Example Workflows
6. Creating Workflows
7. Running Workflows
8. Submit Directory Details
9. Monitoring, Debugging and Statistics
10. Containers
11. Data Transfers
12. Optimizing Workflows for Efficiency and Scalability
13. Migration Notes
14. Glossary
Reference Guide
1. Workflow API
2. Configuration
3. Catalogs
4. Mapping Refinement Steps
5. Data Management
6. Monitoring
7. PegasusLite
8. Pegasus Service
9. CWL Support
10. Variable Expansion
11. Command Line Tools
12. Funding, citing, and anonymous usage statistics
Pegasus Development
Code Documentation
Schemas
Pegasus WMS
Index
Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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K
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L
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M
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N
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O
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P
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R
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S
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T
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U
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W
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X
A
AARCH64 (Arch attribute)
Abstract Workflow (formerly known as DAX, prior to 5.0 version)
AbstractJob (class in Pegasus.api.workflow)
add_args() (AbstractJob method)
add_checkpoint() (AbstractJob method)
add_condor_profile() (ProfileMixin method)
add_condor_profiles() (ProfileMixin method)
add_containers() (TransformationCatalog method)
add_dagman_profile() (ProfileMixin method)
add_dagman_profiles() (ProfileMixin method)
add_dependency() (Workflow method)
add_directories() (Site method)
add_env() (ProfileMixin method)
add_file_servers() (Directory method)
add_globus_profile() (ProfileMixin method)
add_globus_profiles() (ProfileMixin method)
add_grids() (Site method)
add_inputs() (AbstractJob method)
add_jobs() (Workflow method)
add_metadata() (MetadataMixin method)
add_outputs() (AbstractJob method)
add_pegasus_profile() (ProfileMixin method)
add_pegasus_profiles() (ProfileMixin method)
add_planner_args() (SubWorkflow method)
add_profiles() (ProfileMixin method)
add_regex_replica() (ReplicaCatalog method)
add_replica() (ReplicaCatalog method)
add_replica_catalog() (Workflow method)
add_requirement() (Transformation method)
add_selector_profile() (ProfileMixin method)
add_selector_profiles() (ProfileMixin method)
add_shell_hook() (HookMixin method)
add_site_catalog() (Workflow method)
add_site_profile() (Properties method)
add_sites() (SiteCatalog method)
(Transformation method)
add_transformation_catalog() (Workflow method)
add_transformations() (TransformationCatalog method)
AIX (OS attribute)
ALL (EventType attribute)
(Operation attribute)
AMD64 (Arch attribute)
analyze() (Workflow method)
Arch (class in Pegasus.api.site_catalog)
AUXILLARY (SupportedJobs attribute)
B
BATCH (Grid attribute)
braindump (Workflow property)
C
CLEANUP (SupportedJobs attribute)
Clustering
COMPUTE (SupportedJobs attribute)
Compute Site
Concrete Workflow or Executable Workflow
CONDOR (Grid attribute)
(Namespace attribute)
(Scheduler attribute)
Container (class in Pegasus.api.transformation_catalog)
CREAM (Grid attribute)
D
DAGMAN (Namespace attribute)
Deferred Planning
DELTACLOUD (Grid attribute)
Directed Acyclic Graph (DAG)
Directory (class in Pegasus.api.site_catalog)
DOCKER (Container attribute)
DuplicateError
E
EC2 (Grid attribute)
END (EventType attribute)
ENV (Namespace attribute)
ERROR (EventType attribute)
EventType (class in Pegasus.api.mixins)
F
File (class in Pegasus.api.replica_catalog)
FileServer (class in Pegasus.api.site_catalog)
FORK (Scheduler attribute)
Full Ahead Planning
G
GET (Operation attribute)
get_inputs() (AbstractJob method)
get_job() (Workflow method)
get_outputs() (AbstractJob method)
get_status() (Workflow method)
get_stderr() (AbstractJob method)
get_stdin() (AbstractJob method)
get_stdout() (AbstractJob method)
Globus
GLOBUS (Namespace attribute)
Globus Toolkit
GRAM
graph() (Workflow method)
Grid
(class in Pegasus.api.site_catalog)
GridFTP
GT5 (Grid attribute)
H
Hierarchical Workflow
HookMixin (class in Pegasus.api.mixins)
HTCondor DAGMan
HTCondor-G
I
IA64 (Arch attribute)
Input Site
Invocation Record
J
Job
(class in Pegasus.api.workflow)
K
Kickstart
L
LINUX (OS attribute)
LOCAL_SCRATCH (Directory attribute)
LOCAL_STORAGE (Directory attribute)
Logical File Name (LFN)
ls() (Properties static method)
LSF (Scheduler attribute)
M
MACOSX (OS attribute)
Metadata
MetadataMixin (class in Pegasus.api.mixins)
module
Pegasus
Pegasus.api
Pegasus.api.errors
Pegasus.api.mixins
Pegasus.api.properties
Pegasus.api.replica_catalog
Pegasus.api.site_catalog
Pegasus.api.transformation_catalog
Pegasus.api.workflow
Pegasus.api.writable
N
Namespace (class in Pegasus.api.mixins)
NEVER (EventType attribute)
NORDUGRID (Grid attribute)
NotFoundError
O
Open Science Grid (OSG)
Operation (class in Pegasus.api.site_catalog)
OS (class in Pegasus.api.site_catalog)
Output Replica Catalog
Output Site
P
path (Writable property)
PBS (Scheduler attribute)
Pegasus
module
PEGASUS (Namespace attribute)
Pegasus.api
module
Pegasus.api.errors
module
Pegasus.api.mixins
module
Pegasus.api.properties
module
Pegasus.api.replica_catalog
module
Pegasus.api.site_catalog
module
Pegasus.api.transformation_catalog
module
Pegasus.api.workflow
module
Pegasus.api.writable
module
PegasusError
Physical File Name (PFN)
plan() (Workflow method)
PPC (Arch attribute)
PPC64LE (Arch attribute)
PPC_64 (Arch attribute)
ProfileMixin (class in Pegasus.api.mixins)
Properties (class in Pegasus.api.properties)
PUT (Operation attribute)
R
REGISTER (SupportedJobs attribute)
remove() (Workflow method)
Replica Catalog
ReplicaCatalog (class in Pegasus.api.replica_catalog)
run() (Workflow method)
run_output (Workflow property)
S
Scheduler (class in Pegasus.api.site_catalog)
SELECTOR (Namespace attribute)
set_stderr() (AbstractJob method)
set_stdin() (AbstractJob method)
set_stdout() (AbstractJob method)
SGE (Scheduler attribute)
SHARED_SCRATCH (Directory attribute)
SHARED_STORAGE (Directory attribute)
SHIFTER (Container attribute)
SINGULARITY (Container attribute)
Site
(class in Pegasus.api.site_catalog)
Site Catalog
SiteCatalog (class in Pegasus.api.site_catalog)
SLURM (Scheduler attribute)
SPARCV7 (Arch attribute)
SPARCV9 (Arch attribute)
Staging Site
Stampede Database
START (EventType attribute)
STAT (Namespace attribute)
statistics() (Workflow method)
status() (Workflow method)
Sub Workflow
Submit Directory
SubWorkflow (class in Pegasus.api.workflow)
SUCCESS (EventType attribute)
SUNOS (OS attribute)
SupportedJobs (class in Pegasus.api.site_catalog)
T
Task
to_kb() (in module Pegasus.api.mixins)
to_mb() (in module Pegasus.api.mixins)
TRANSFER (SupportedJobs attribute)
Transformation
(class in Pegasus.api.transformation_catalog)
Transformation Catalog
TransformationCatalog (class in Pegasus.api.transformation_catalog)
TransformationSite (class in Pegasus.api.transformation_catalog)
U
UNICORE (Grid attribute)
UNKNOWN (Scheduler attribute)
W
wait() (Workflow method)
WINDOWS (OS attribute)
Workflow (class in Pegasus.api.workflow)
Writable (class in Pegasus.api.writable)
write() (Properties method)
(Workflow method)
(Writable method)
X
X86 (Arch attribute)
X86_64 (Arch attribute)
XSEDE